Azure​

• Updated default Azure Batch pool image to Ubuntu 24.04 by @pditommaso in 114d0e4c

General​

• Pinned rnaseq-nf to v2.3 in Azure validation script by @pditommaso in 8f7e5780

Bug fixes​

S3​

• Fixed S3FileSystemProvider.newInputStream() draining full object on close by @jorgee in #7046

General​

• Fixed world-readable seqera-auth.config credential file by @arnaualcazar in #7182
• Fixed LogsCheckpoint thread interrupt race condition by @pditommaso in #6939

Dependencies​

• Bumped nf-amazon@3.4.5 by @pditommaso in b9074b2d
• Bumped nf-tower@1.17.7 by @pditommaso in da09f092
• Bumped nf-azure@1.20.3 by @pditommaso in 1e000afe

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.6

Access control​

• Enabled GitHub App credentials for all workspaces.

Compute environments​

• Added security group name search to AWS drop-downs.

Pipelines​

• Surfaced launch-time settings, including profiles and syntax parser, in the run config tab.

Bug fixes​

Data explorer​

• Fixed IGV index file handling by presigning indexURLs independently.

Pipelines​

• Fixed the Nextflow syntax parser v2 toggle to seed from the saved launch config.
• Included syntaxParser in the workflow launch API response.
• Cleared stale main script launch errors.
• Fixed the launch form to skip the lineage request in user space.

Language features​

• Improved the error message when enabling types with syntax parser v1 by @jorgee in #7173

Plugins​

• Made plugin metadata prefetch resilient to registry rate limiting by @pditommaso in #7181

Fusion​

• Added support for fetching local files in FUSION_CONTAINER_CONFIG_URL by @alberto-miranda in #7142

Bug fixes​

S3​

• Fixed bucket cleanup in S3 test by @bentsherman in #7172

General​

• Fixed docs CI on Python 3.14 by upgrading Sphinx by @jorgee in #7175

Dependencies​

• Bumped nf-azure@1.22.5
• Bumped nf-google@1.27.3
• Bumped nf-k8s@1.5.4
• Bumped nf-seqera@0.20.1
• Bumped nf-tower@1.28.0
• Bumped nf-wave@1.21.0

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.3

Pipelines​

• Exposed tower.launch.config.maxSize to frontend validators so launch configuration size limits stay aligned with the backend.

Bug fixes​

Pipelines​

• Added frontend validation of paramsText against its JSON-serialized size to align launch parameter limits with backend submission constraints.
• Added missing metadata, pipeline versioning, and data lineage fields to the workflow launch form summary.
• Fixed the workflow launch payload to always send lineage.enabled so the data lineage toggle setting persists correctly.

General​

• Fixed the workspace switcher to keep the search input focused during arrow-key navigation.
• Fixed background worker shutdown by draining workers before JedisPool shutdown to prevent dropped jobs.
• Fixed navigation switcher responsiveness.

Highlights​

• Co-Scientist is now available for Enterprise deployments.
• Pipelines now support a GitHub App manifest flow for credential creation, with higher throughput than personal access tokens (PATs).
• Compute environments support descriptions and can be disabled, and Google Batch and Azure Batch have significant stability and scalability improvements.
• AWS, Azure, and GCP each gain deeper credential and identity management, including Workload Identity Federation (WIF) for Google Cloud Batch and Entra service principal support for Azure Batch.
• Nextflow data lineage is configurable and attached to pipeline runs and Data Explorer objects.
• Existing Studios can be edited, and new workspace settings for custom container registry controls and default collaboration modes provide top-down granular management.
• Datasets now support linked (URL-referenced) remotely-hosted data.
• Data Explorer adds IGV and Molstar 3D viewer for genomic and structural files, respectively.
• Audit logs have a new user interface with on-demand CSV export, configurable maximum records, and richer event context. The Admin panel exposes real-time usage metrics.

Feature updates and improvements​

Co-Scientist​

• Added support for Co-Scientist in Enterprise deployments.

Studios​

• Enabled Studios on all workspaces by default. See the Upgrade guide for more information.
• Added workspace setting for default Studios session collaboration.
• Added multi-stage builds and Wave v1.33.0 support for custom Studios containers.
• Added nameStrategy configuration option to Studios workspace settings.
• Added ability to edit the settings of stopped Studios.
• Container registry improvements, including:
  • Configurable container repository path for custom image builds.
  • Configurable container image naming strategy (default, tag prefix, image suffix, none).
• Added new environment variables. See Data features for the full descriptions and defaults:
  • SSH settings:
    • Allowed workspaces
    • Enable key management
    • Limit SSH connections to authenticated sessions via key fingerprint
    • Custom SSH server domain
    • Custom connection string display port
  • Custom Studio images:
    • Disallowed image repositories
    • Image naming strategy
    • Wave build status checks
  • Default privacy settings (private vs. collaborative by default)
  • Studios displayed per page
  • Feature manifest URL for version compatibility checks
  • Per workspace startup metrics & retention policy

Compute environments​

• Added ability to disable a compute environment.
• Improved compute environment form warning display with individual stacked alerts.
• Added m8gn, m8gb, c8id, m8id, r8id, x8aedz, g7e, p6-b300 instance families to NVMe list.
• Added new environment variable. See Configuration overview for the full descriptions and defaults:
  • TOWER_COMPUTE_ENV_CLEANUP_*

Azure​

• Added separate head and worker pool support for Azure Batch compute environments in both Forge and manual modes.
• Changed default Azure Batch job timeout to 7 days and exposed it as a new configuration item.
• Updated default Azure termination policy in compute environment creation form.
• Added VNet and subnet support for Azure Batch compute environments.
• Added support for separate managed identity client IDs and resource IDs for head and compute jobs in Azure Batch.
• Enabled Entra service principal credentials for Azure Batch Forge pool creation and Fusion v2.

AWS​

• Added AWS credential modes with support for key-based and role-based access.
• Added AWS External ID support for role-based credentials.

GCP​

• Added Workload Identity Federation (WIF) credential support for Google Batch and Google Cloud compute environments.
• Added support for network tagging in Google Batch.
• Added boot disk image selection for Google Batch compute environments.
• Added support for multiple machine types in Google Batch compute environments.
• Added configurable retry behavior for tasks with null exit codes in Google Batch compute environments.

Pipelines​

• Redesigned workflow notification email templates with updated styling.
• Added GitHub App manifest flow for credential creation.
• Improved clipboard UX in workflow details header.
• Redesigned report preview modal header layout and modal.
• Registered Nextflow CLI as a static OIDC client for authorization code with PKCE flow.
• Enriched the POST /trace/create response with platform metadata to reduce downstream API calls from Nextflow.

Datasets​

• Added preview for linked (URL-referenced) datasets.

Data Explorer​

• Added IGV for genomic data visualization.
• Added Molstar 3D viewer for molecular data visualization.
• Added extensible view mode selection for JSON files in Data Explorer (JSON, IGV, and plain text).
• Added auto-detection for IGV-renderable files (.bam, .bed, etc.).
• Updated Data Explorer to display non-native browser files as text when opened in a new tab.
• Added Fusion symlink resolution to the Data Explorer API.
• Increased the maximum data link name length to 512 characters.

Access control​

• Added required description field to custom role creation.
• Exposed roles API endpoints in the OpenAPI specification.
• Added SSO domain-based redirect for the login guard.

Monitoring and observability​

Admin panel

• Added real-time active user count display.
• Added workspace usage metrics.

Audit logs v2: new capabilities

• Added CSV export from the admin audit logs v2 table, with a configurable maximum record limit.
• Switched to token-based pagination for improved performance.
• Added comprehensive logging for SSO lifecycle events.
• Added descriptions and documentation metadata to audit event types, and renamed outdated event types for consistency.

Audit logs v2: richer event context

• Added owner ID and workspace ID metadata to Studios session audit events and to all data link audit events.
• Added target organization, workspace, and user context to audit log v2 interfaces.
• Added a target_name field to the data model and surfaced target resource names across event emission points, the admin table, the API, the UI, and CSV exports.

Audit logs v2: migration and cleanup

• Migrated telemetry usage queries to the v2 table.
• Updated the audit log cleaner to handle both v1 and v2 tables.
• Removed unused instanceId and instanceName columns from the v2 table.

Environment variables

• See the Configuration overview for the full descriptions and defaults:
  • TOWER_AUDIT_LOG_V2_WRITE_MODE
  • TOWER_AUDIT_LOG_V2_CSV_EXPORT_MAX_LOGS
  • TOWER_AUDIT_LOG_V2_PRE_POST_CHANGE_ENABLED
  • TOWER_CRON_AUDIT_LOG_CLEAN_UP_*

General​

• Bumped Micronaut from 4.7.6 to 4.8.3.
• Improved admin workspace list toolbar responsiveness.
• Applied updated status icons across platform components.
• Redesigned page header layout with improved toolbar and breadcrumb integration.
• Added automatic breadcrumb navigation to page headers.
• Updated delete workspace confirmation modal text to clarify the impact of deletion.
• Removed the dynamic resource labels feature toggle (feature is now always active).

Bug fixes​

Studios​

• Added workspace existence check before creating Studios workspace settings.
• Added validation of Git repository configuration files when creating a Studio.
• Fixed broken navigation from Studio details page for private Studios.
• Updated R-IDE to respect compute environment and Studio-specific environment variables.
• Fixed CSP header empty directive.

Compute environments​

• Fixed Google Batch machine type migration to be portable across MySQL and MariaDB.
• Removed hardcoded prediction model configuration from AWS Cloud platform provider.
• Fixed metering event handling to batch events when more than 100 events are received, preventing silent data loss.
• Removed default terminateAsync implementation to enforce explicit provider implementations.
• Propagated AWS Forge disposal failures instead of silently swallowing exceptions.
• Pinned google-cloud-storage to a compatible version to fix NoClassDefFoundError on GCS data link access.
• Returned an actionable error message when an Azure Batch pool is missing during job submission.
• Propagated GCP Forge disposal failures instead of silently ignoring resource deletion errors.
• Enabled cloud cache for Kubernetes compute environments with local PVC paths.

Pipelines​

• Fixed pipeline implicit default version resolution.
• Removed logs from AI debug button URL to prevent URI too large errors.
• Replaced document.write with client-side form submission in GitHub App manifest flow to fix Firefox blank page issue.
• Made workflow job cancellation idempotent to prevent 500 errors on concurrent cancel requests.
• Fixed parallel requests to pipeline info in the launch form.

Datasets​

• Fixed LazyInitializationException in avatar resolution during dataset creation.
• Fixed dataset name field to apply input normalization (spaces converted to underscores).
• Fixed column order preservation in dataset preview for TSV files.

Data Explorer​

• Fixed IGV MIME type detection in Data Explorer.

Monitoring and observability​

• Fixed dashboard drop-down scrolling and character overflow.
• Fixed task logging to use populated taskId instead of empty id.
• Fixed user_sign_in audit events to correctly populate the actor field with the signing user's ID.

General​

• Fixed side navigation width not updating in Safari when toggling the collapsed state.
• Fixed credits banner appearing during page load.
• Fixed oversized icon on the forbidden access page.

Upgrade notes​

Breaking changes​

Audit log versions in 26.1​

Seqera Platform Enterprise 26.1 introduces the audit log v2 schema as a breaking change for direct database consumers and custom ETL jobs. See the Upgrade guide for guidance.

Azure Batch Ubuntu 24.04 and AppArmor​

The ubuntu-hpc image in Azure Batch now defaults to Ubuntu 24.04, whose kernel and AppArmor policy block the unprivileged user namespaces and FUSE mounts Fusion needs. Running Fusion on Ubuntu 24.04+ pools therefore requires an AppArmor profile that permits Fusion mounts to be loaded on every node, plus a matching --security-opt on each task container. This requires installing the AppArmor profile on the pool nodes. See Azure Batch AppArmor.

Forge compute environments

Seqera Platform handles everything automatically. No action required.

Manual compute environments

When Fusion is enabled and the pool's image SKU is 2404 or higher, Seqera Platform automatically appends the options below to the generated Nextflow configuration:

process.containerOptions = '--security-opt apparmor=seqera-fusionfs-container'

Compute environments​

• Added a configurable boot disk size for Azure Batch pools.
• Added r8idn, r8idb, m8idn, and m8idb instance families to the NVMe list.

Monitoring​

• Improved the JSON diff component with small refinements.

Pipelines​

• Added the Lineage ID to the Run Info page.

General​

• Introduced a panel search input and integrated it into the navigation switcher component.
• Improved workspace switch redirects to preserve the active sidebar section.

Bug fixes​

Access control​

• Fixed the audit event type for MANUAL-to-SCIM promotion.
• Kept the infinite-scroll drop-down open when clicking the search input.

Compute environments​

• Improved Entra robustness by adding equals/hashCode for credentials and making the managed identity regex case-insensitive.
• Deduplicated the compute environment entry in the launch drop-down.

Data Explorer​

• Made credentials a required field in the Add data repository form.
• Fixed the Data Explorer custom bucket E2E test to select credentials.

Monitoring​

• Fixed a referential integrity constraint violation when saving an audit log image bundle in H2.
• Replaced the word ID with IP in the audit logs table.
• Coalesced setAvailableCredits calls per organization.
• Coalesced stop events per organization using a Redis lock.
• Added a differential TTL and empty-result guard for the Metronome balance cache.
• Coalesced handleOrganizationCreditsExpiration calls per organization.
• Skipped null balance puts in listGrantBalance to avoid a ConcurrentHashMap NPE.

Pipelines​

• Refined workflow_updated events that contain no diff.
• Prevented duplicate GitHub credentials across PAT and GitHub App types.
• Resolved file paths to the most recent lineage record.

General​

• Fixed the expandable-text overlay to display only when text is truncated.
• Preserved panel search focus inside mat-menu.

Language features​

• Validated module spec against JSON schema by @pditommaso in #7094
• Updated guidelines for strict parser by @bentsherman in #7134

General​

• Honored token field in BitbucketServerRepositoryProvider by @jorgee in #7120
• Picked up force-pushed branches in multi-revision repo strategy by @jorgee in #7103
• Tightened CI security and removed dead code in workflows by @ewels in #7139
• Updated GitHub Actions with security updates by @ewels in #7138

Dependencies​

• Pinned python to 3.14.5 by @seqeralabs-renovate in #7152
• Bumped nf-azure@1.22.4 by @pditommaso in 2bcc6e8c
• Bumped nf-k8s@1.5.3 by @pditommaso in b2ea7492
• Bumped nf-seqera@0.20.0 by @pditommaso in 4d55e81e

Bug fixes​

Language features​

• Fixed module run to allow optional path inputs by @bentsherman in #7163
• Fixed destructured record input in module run by @bentsherman in #7164
• Fixed function calls in typed process outputs by @bentsherman in #7148
• Fixed strict parser to include params refs in task hash by @bentsherman in #7165
• Normalized TaskPath to Path in typed process outputs by @stekaz in #7090

Azure​

• Fixed Azure rnaseq-nf test by @bentsherman in #7143

General​

• Released HTTP sockets when reading HTTP attributes to avoid 503 throttling by @jorgee in f2b0284e

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.2

General​

• Demoted 'Request processing' log to trace in RegistryProxyService by @pditommaso in #1047

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.5...v1.33.6

General​

• Ported Wave CI to push to internal ECR (SEC-1395) by @ShahzebMahmood in #1039
• Embedded OpenAPI spec and Swagger UI in main Wave container by @pditommaso in #1043
• Used addIfLess for JWT refresh timer scheduling by @pditommaso in #1045

Dependencies​

• Updated node dependency to v24 by @seqeralabs-renovate in #1023

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.4...v1.33.5

Compute environments​

• Added a CloudInfo cloud instance type catalog and chip-selector filters specification.
• Added a description field to the Compute Environment V2 form.

Datasets​

• Exposed dataset file size in version API responses.

Monitoring​

• Added a getCost failure metric.
• Rendered fractional Allocated CPU values on the Run Details metrics card.
• Added SCIM group audit logs.

Pipelines​

• Added a Nextflow syntax parser v2 toggle.
• Added launch-time settings to the workflow configuration tab.

Studios​

• Added the compute environment name to the Studios row card.
• Added new API endpoints to fetch compatible compute environments for a Studio and update the compute environment on a Studio.
• Enabled updating the compute environment on a Studio.
• Resolved the user on SSH Studio connection attempts.

Data Explorer​

• Cached the impersonated signer for WIF pre-signed URLs.

General​

• Introduced scroll-into-error behavior for the notification container component and unified the placement of message containers across form pages.
• Collapsed Settings breadcrumbs to two segments.
• Refined styling for the bordered variant of label values.
• Improved readability of usage chip icons on dark backgrounds.

Bug fixes​

Access control​

• Redirected on JWT expiry and stopped the onboarding polling loop.
• Auto-created organization membership during IdP group reconciliation.
• Polished the IdP group mapping UI.

Compute environments​

• Validated NVMe and Wave dependencies for Fusion v2.
• Split Forge disposal into separate resources and credentials phases.
• Ported the Forge disposal split to Azure and GCP.
• Clarified setRemoteAvailableCredits behavior and floored stale balance updates.
• Granted lineage store access to the forged AWS Batch role.
• Bumped the GCP default GPU image family to CUDA 12.9.
• Resolved the WIF credential owner context inside a read-only transaction.

Data Explorer​

• Supported GCS pre-signed URLs with WIF credentials in Data Explorer.

Pipelines​

• Disabled the lineage launch toggle when lineage settings are not configured or when the compute environment does not support lineage.
• Set the default value for Launch.syntaxParser to match the database schema.
• De-flaked the PipelineServiceTest agent revisions check.

Studios​

• Recovered legacy Studio event names in the usage query.
• Fell back to baseline Studio capabilities when the manifest is missing or the Studio version is not found in the manifest.

General​

• Pinned the Netty allocator to pooled to mitigate Micronaut 4.9 direct memory growth.
• Stopped ProviderUnrecoverableException from hiding JVM errors.
• Increased the polling timeout for the async audit image bundle test.

This has an interactive form where you can browse all MultiQC config attributes (there are quite a lot). See them organised with help text and examples. Enter values into the form and have them validated in real time. 📋 ✅

Then see your generated YAML config in a code editor (where you can paste existing configs if you wish). See the config file explained, validated and suggestions for fixes. 📚

The config wizard is a static HTML file that is bundled with the MultiQC repo, but it's easiest to try out online: https://seqera.io/multiqc_config_wizard ✨

New modules​

• CheckAtlas (#3545)
  • A one-liner tool for quality control of single-cell atlases.
• Deacon (#3564)
  • Search and depletion of FASTA/FASTQ files and streams using accelerated minimizer matching.
• FastQE (#3490)
  • Uses emoji to represent FASTQ sequence quality scores.
• hicstuff (#3541)
  • Hi-C pipeline that generates contact maps from sequencing reads.
• HiFi-Trimmer (#3513)
  • Filters and trims adapter sequences from HiFi reads using BLAST.
• Riker (#3540)
  • Fast Rust toolkit that ports key sequencing QC tools from Picard.
• sincei (#1946)
  • Toolkit for processing and analysing single-cell (epi)genomics data.
• Trim Galore (#3538)
  • Native v2.x support: quality and adapter trimming for next-generation sequencing data, with special handling for RRBS libraries.

Module updates​

• Bases2Fastq: Major upgrade to the module, now shows a lot more information (#3460)
• Falco: Add native recognition for Falco output (#3497)
• Fastp: Add % surviving bases (#3472)
• Sequali: Expand general statistics, add normalised plots (#3530)

Module fixes​

• Bcftools: Fix stats zero-depth plot crash (#3556)
• Cell Ranger ARC: Fix key collisions between ATAC and GEX metrics (#3480)
• Dragen: Fix incorrect average GC% in FastQC for all samples except the first in batch (#3505)
• Haplocheck: Don't overwrite prior results, allow multiple samples (#3512)

Feature updates and improvements​

• Config: Major new automations using config schema (#3183, #3558, #3561)
  • Automated markdown reference documentation of all config attributes for the docs
  • New interactive tool for building, editing and validating MultiQC config files: https://seqera.io/multiqc_config_wizard
• AI: Catch unexpected AWS Bedrock response shapes (#3440)
• custom_plot_config: Fix deprecated camelCase aliases (e.g. yPlotBands) (#3547)
• custom_plot_config: Per-tab targeting for multi-data_labels plots (#3548)
• Custom content: Fix crash on data type conflict between files (#3560)
• Custom images: Support more MIME types, add custom favicon (#3469)
• Plots: Add section alerts for filtered samples (#3549)
• Plots: Fix barplot ValueError when all categories are zero (#3563)
• Report: Add spacing between AI summary and general stats (#3470)
• Run merging: Fix grouped sample totals and hierarchy being lost during parquet merging (#3559)
• Tables: Allow defaultsort to include the first column header (#3519)
• Tests: Fix pytest warning sources (#3551)

Fixes​

• Config: Fix env var overwrite where booleans/ints/floats were stored as strings (#3557)
• Core: Fix rich.panel import in module-failure exception handler (#3537)
• custom_plot_config: Fix parsing of y_bands/x_bands/x_lines/y_lines (#3459)
• Report: Fix race causing empty zip files when exporting plots (#3555)

Infrastructure and packaging​

• Claude Code: Update agent instructions (#3552)
• Frontend: Update npm packages (#3562)
• Packaging: Bump minimum Python to 3.9 (#3542)
• Polars: Replace deprecated polars-lts-cpu dependency (#3553)
• Polars: Use Pyodide-compatible dependency on Emscripten (#3554)

Optimization, refactoring and typing​

• Linting: Drop Python 2-era idioms (#3546)

New Contributors​

• @hemant-goyal made their first contribution in https://github.com/MultiQC/MultiQC/pull/3497
• @FelixKrueger made their first contribution in https://github.com/MultiQC/MultiQC/pull/3538
• @yunhailuo made their first contribution in https://github.com/MultiQC/MultiQC/pull/3480
• @vivekbhr made their first contribution in https://github.com/MultiQC/MultiQC/pull/1946
• @tfenne made their first contribution in https://github.com/MultiQC/MultiQC/pull/3540
• @muffato made their first contribution in https://github.com/MultiQC/MultiQC/pull/3513
• @js2264 made their first contribution in https://github.com/MultiQC/MultiQC/pull/3541
• @chelauk made their first contribution in https://github.com/MultiQC/MultiQC/pull/3492

Full Changelog: https://github.com/MultiQC/MultiQC/compare/v1.34...v1.35

General​

• Updated migration docs now that 26.04 is released by @ewels in #7085

Dependencies​

• Bumped ch.qos.logback:logback-classic to v1.5.32 by @seqeralabs-renovate in #7126
• Bumped nf-amazon@3.9.1 by @pditommaso in 816c0774
• Bumped nf-azure@1.22.3 by @pditommaso in 78fa5013
• Bumped nf-codecommit@0.5.2 by @pditommaso in 4ae5c872
• Bumped nf-seqera@0.19.1 by @pditommaso in 764003a9

Bug fixes​

General​

• Fixed module binaries on nextflow module run via session flag by @pditommaso in #7089

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.1

General​

• Truncated verbose DEBUG log payloads to reduce heap pressure by @pditommaso in #1041

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.3...v1.33.4

Feature updates and improvements​

Access control​

• Automatically disabled SSO on organization deletion.
• Enabled SSO domain verification.
• Skipped showcase workspace enrollment for free-tier users.

Compute environments​

• Added an export configuration option to the compute environment menu.

General​

• Added inactive scope styles and a settings breadcrumb trail.
• Aligned workspace settings routes and page titles.
• Updated workspace settings hub copy and added E2E selectors.
• Updated the labels page and modal type copy.

Bug fixes​

Compute environments​

• Fixed the compute environment edit form to skip name copy-rename when opened.

Data Explorer​

• Prevented bucket actions from becoming stuck in the CREATING state.

Studios​

• Fixed the redirection route for the Save as new Studio action.

Feature updates and improvements​

Dependencies​

• Bumped nf-tower@1.17.6 by @pditommaso

Bug fixes​

Language features​

• Fixed formatting bug with map key expression by @bentsherman in #6893
• Fixed incorrect evaluation of secret process directive by @bentsherman in #6934
• Fixed params block in included module by @bentsherman in #6940
• Fixed params inclusion across modules in v2 parser by @bentsherman in #6766

Configuration​

• Fixed resolution of params in resolved config text by @jorgee in #7072

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v25.10.5

Compute environments​

• Added force-delete for stuck compute environments.
• Added an optional description field to compute environments.
• Added region name search to the Seqera Compute drop-down mwnu.

Pipelines​

• Added Nextflow lineage integration with indexing, API, and UI for browsing workflow lineage data.
• Added cron action source for scheduled pipeline launches.
• Added effectiveCpus and effectiveMemory helpers on Task.

Monitoring​

• Added GPU metrics.

General​

• Added automatic breadcrumb navigation in the page header.

Bug fixes​

Compute environments​

• Fixed AWS Batch child jobs to terminate on workflow cancellation.
• Added hpc6id to the NVMe instance families allowlist.

Data Explorer​

• Fixed 403 errors to surface properly when adding a data-link to a GCS bucket.
• Fixed text overflow in the Data Explorer modal.

Pipelines​

• Fixed cpuShares to vCPU conversion in Task.getEffectiveCpus.
• Fixed parameters being hidden in the launch form when hidden=false is set in nextflow_schema.json.

Access control​

• Fixed user metadata reading for name, surname, and organization fields.
• Fixed organization claim reading to use the namespaced claim instead of user_metadata.
• Classified DCR-registered OIDC clients as third-party.
• Updated the default refresh token expiration in OIDC.
• Fixed POST /metering to allow regular authenticated users.

Studios​

• Fixed the Studio form to enable buttons after valid input.
• Fixed the Mount data button to display on the Studios form.

General​

• Fixed copy icon position by pinning it to the top-right corner in code blocks.

Access control​

• Added an Enterprise AI OAuth client parameter.
• Added the ability to edit workspaces from the admin panel.
• Added configurable access and refresh token expiration per client.
• Refined the copy in the SSO management section.

Compute environments​

• Added a compute instance types selector for AWS Cloud Scheduler.
• Aggregated CPU-hours in shares to preserve fractional allocations.

Pipelines​

• Added data lineage indexing.
• Enabled the AI debug button.

Platform API​

• Persisted requested CPU and memory values on WorkflowLoad.

Bug fixes​

Access control​

• Fixed frontend Cloud SSO feature handling.
• Updated the default refresh token expiration in OIDC.

Datasets​

• Fixed the dataset name maximum length in the frontend to match the backend.

Pipelines​

• Resolved a race condition in the Lineage section of task details.

Feature updates and improvements​

Configuration​

• Renamed nextflow.preview.types feature flag to nextflow.enable.types by @pditommaso in #7067
• Added support for validation of collection params with record types by @bentsherman in #7025

General​

• Added -user-secret and -workspace-secret flags to nextflow launch by @rnaidu-seqera in #7040

Bug fixes​

Language features​

• Fixed runtime type reflection in nf-lang by @bentsherman in #7077

General​

• Fixed ANSI colors in error messages by @ewels in #7078

Dependencies​

• Bumped nf-tower@1.27.0

Full changelog: https://github.com/nextflow-io/nextflow/releases/tag/v26.04.0

Container building​

• Added BuildEnabled flag in MultiPlatformBuildService by @munishchouhan in #1030

General​

• Added missing configuration documentation by @munishchouhan in #1025
• Refined Docker Compose setup for Wave Lite by @munishchouhan in #1033
• Reduced Wave resource requirements in installation manifests by @bebosudo in #1028
• Updated documentation with minor clarity improvements by @christopher-hakkaart in #1034

Dependencies​

• Updated third-party dependency versions to latest stable by @cristianrcv in #1037

Bug fixes​

Container building​

• Added micromamba clean to v2 templates to reduce image size by @munishchouhan in #1038

Singularity​

• Fixed pixi Singularity template PATH environment by @munishchouhan in #1036

Full changelog: https://github.com/seqeralabs/wave/compare/v1.33.2...v1.33.3

Access control​

• Added PKCE and consent flow support to OIDC, enabling Seqera Platform to act as an identity provider for OIDC/OAuth2 clients such as the Seqera AI CLI.

Bug fixes​

Pipelines​

• Fixed Nextflow timeline config generation to resolve NXF_TML_FILE via System.getenv instead of relying on shell variable expansion.
• Fixed the Browse button in the pipeline launch form being hidden for users with Launch, Connect, or View workspace roles by gating it on the correct permission instead of the Studios studio:execute grant.

Upgrade notes​

No breaking changes. Standard upgrade procedure applies.